Installation

INSPIRE package is publicly available at https://github.com/jiazhao97/INSPIRE.

INSPIRE can be downloaded from GitHub:

git clone https://github.com/jiazhao97/INSPIRE.git
cd INSPIRE
conda env update --f environment.yml
conda activate inspire

After installation, the package can be imported in Python by:

import INSPIRE

Software dependencies

python=3.8.15
pytorch=1.12.1
scanpy=1.8.2
anndata=0.9.2
pandas=1.5.3
numpy=1.24.4
louvain=0.8.0
umap-learn=0.5.5
numba=0.58.1
matplotlib=3.5.3
python-annoy=1.17.2
scikit-misc=0.1.4