Installation 
============

Installation
------------
INSPIRE package is publicly available at https://github.com/jiazhao97/INSPIRE.

INSPIRE can be downloaded from GitHub:

.. code-block:: python

   git clone https://github.com/jiazhao97/INSPIRE.git
   cd INSPIRE
   conda env update --f environment.yml
   conda activate inspire

After installation, the package can be imported in Python by:

.. code-block:: python

   import INSPIRE

Software dependencies
---------------------
.. code-block:: python

   python=3.8.15
   pytorch=1.12.1
   scanpy=1.8.2
   anndata=0.9.2
   pandas=1.5.3
   numpy=1.24.4
   louvain=0.8.0
   umap-learn=0.5.5
   numba=0.58.1
   matplotlib=3.5.3
   python-annoy=1.17.2
   scikit-misc=0.1.4